Comment on 'Indirect Fitness Benefits Enable the Spread of Host Genes Promoting Costly Transfer of Beneficial Plasmids'

Abstract

In their 2016 paper, Dimitriu and colleagues make use of both experimental and analytical techniques to study horizontal gene transfer and the conditions under which indirect fitness effects select for cells with high donor ability. They report both empirically and theoretically that population bottlenecks can select for immobile genes that facilitate the spread of mobile gene elements. Unfortunately, while Dimitriu and colleagues’ in vitro and in silico work provides solid evidence of donor selection, the mathematical model used to explain these results does not agree with the conceptual model described in the surrounding paragraphs and displays nonphysical behavior. Here, we present a correction to the algebra, bringing it in line with the conceptual model presented; we find that selection for donor ability is no longer supported. We then discuss the key differences between Dimitriu and colleagues’ simulation (which select for plasmid donation) and their conceptual patch model (which does not), highlighting the subtle modeling decisions that lead the 2 models to diverge. Our sole focus in what follows is the patch model described in Dimitriu and colleagues’ paper (S1 Text [1]). We make no attempt to discuss other possible circumstances, such as preferential sharing, as explored elsewhere in their paper.

Publication
PLoS Biology 19: e3001449

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